PUBLICATIONS
SHOWING:
Preprints / Undergoing Peer Review
SHOWING:
All Publications
- Hicks, P., & Oluwadare, O. (2022). HiCARN:Resolution Enhancement of Hi-C Data Using Cascading Residual Network. Bioinformatics. [Won 2nd Place at 2022 President’s Academic Showcase at Concordia University Irvine]
- Akpokiro, V., Oluwadare, O., & Kalita, J. (2021, December). DeepSplicer: An Improved Method of Splice Sites Prediction using Deep Learning. In 2021 20th IEEE International Conference on Machine Learning and Applications (ICMLA) (pp. 606-609).
Conferences / Technical Talks
- 2023, Hovenga V.(Author), Kalita J.(Author), and Oluwadare O. (Author & Presenter), Pacific Symposium on Biocomputing (PSB) 2023 Conference, “3D chromosome structure reconstruction using graph convolutional neural networks”. [ Conference Poster]
- 2022, “Modeling 3D Human Genome Structure,” Department of Computer Science, University of Texas, El Paso, 2022. (Invited talk).
- 2021, V. A. (Author & Presenter), Oluwadare, O. (Author), Kalita, J.(Author), International Conference on Machine Learning And Applications, “DeepSplicer: An Improved Method of Splice Sites Prediction using Deep Learning,” IEEE, Sensors, ssociation for Machine Learning and Applications (AMLA), Journal of Machine Learning Theory, Applications and Practice, Virtual. (Dec. 13, 2021).
- 2021, Oral Presentation at ROCKY 2021 Bioinformatics Conference. Dec 2 – 4, 2021 | Aspen/Snowmass, CO
- 2019, Keynote speaker at ROCKY 2019 Bioinformatics Conference. Dec 5 – 7, 2019 | Aspen/Snowmass, CO
- 2019, Oluwadare, O. (Author), Zephyr, L. (Author & Presenter), Mountain Lion Research Day – Spring 2019, University of Colorado, Colorado Springs, UCCS. (December 13, 2019).
- 2019, “Modeling 3D Human Genome Structure,” Department of Computer Science, University of Colorado, Colorado Springs, 2019. (Invited talk)
- 2019, “Modeling 3-D Human Genome Structure,” Department of Computer Science, Southeast Missouri State University, 2019. (Invited talk)
- 2016, Poster on “Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data”. in MCBIOS at University of Tennessee, Memphis. Download MCBIOS Abstract and Poster
Theses
- Oluwatosin Oluwadare. Data Mining and Machine Learning methods for chromosome conformation data analysis. PhD Dissertation. University of Missouri, Columbia, 2019. [PDF]
- Oluwatosin Oluwadare. Gait Analysis On A Smart Floor For Health Monitoring. Master’s Thesis. University of Texas, Arlington, 2015. [ PDF]
Projects
- Jena’ Mazique, an undergraduate student from William Carey University, joined us to work on 3D genome modeling in the Summer 2018, as part of the Computational Neuroscience NSF REU Program. Download the Poster Presentation about genome modeling, Manuscript Report , and a Six page document of the most used terms in Hi-C analysis. Summer 2018